With the new update of SecurePrint, 3 hole punch, stapling, and printing in color is now available on supported Copiers/Printers. 

By default, color is automatically selected and will print in color to printers that are capable.

3 Hole Punch and Stapling

Select "print" on the document as you normally would, then select "More Setttings" and "Print using system dialogue"

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Select the i next to Printer Features

Set the finishing options to this layout for both 3 hole punch and stapling. Make sure Output: is set to Finisher Tray

Select "OK" and print your job. It will print with the features that you set.